PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_9AFA4B870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 321aa    MW: 33669.5 Da    PI: 9.3332
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_9AFA4B870.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.4e-31108167259
                            --SS-EEEEEEE--TT-SS-E..EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefpr..sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dgy+WrKYGqK vk+s+fpr  sYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  Traes_1BL_9AFA4B870.1 108 EDGYRWRKYGQKAVKNSPFPRcrSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 167
                            8******************95449***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3292169IPR003657WRKY domain
SuperFamilySSF1182906.15E-2799169IPR003657WRKY domain
PROSITE profilePS5081129.08102169IPR003657WRKY domain
SMARTSM007744.9E-36107168IPR003657WRKY domain
PfamPF031061.3E-23108167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLASDGAAGA VVVPDGGPGG TAHSVSVSST SSEAGVGGGG AVEDEAGKCK KEEGEGDDES  60
KEAAADGEAD KTKKGAAKGK GAAKAKGEKR PRQARFAFMT KSEVDHLEDG YRWRKYGQKA  120
VKNSPFPRCR SYYRCTTQKC PVKKRVERSY QDAAVVITTY EGKHTHPIPA TLRGANHLLA  180
AHAHAHGGHG LIHPGMFRMP APPGAFRPGD ALGSFLQQQH AAMQHQQQVA AAGMAMRQAN  240
AMASSHMQQA PPADRGLAAA MAGGTTGNST HTVSSSSGTD PLRMEHLMAQ DYGLLQDMLM  300
PPSFAHSDGA TNSNNNAHNR H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2598170878Probable WRKY transcription factor 4
2lex_A2e-2598170878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418444e-98AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418554e-98AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706044e-98AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650015.12e-77PREDICTED: uncharacterized protein LOC103630738
TrEMBLW5A4E60.0W5A4E6_WHEAT; Uncharacterized protein
STRINGGRMZM2G453571_P016e-77(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.17e-44WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]